{
  "_id": "6a12a44bacfb0bcc41d12ad7",
  "Package": "EpiNova",
  "Title": "Flexible Extended State-Space Epidemiological Models with Modern\nInference",
  "Version": "0.1.0",
  "Authors@R": "person(\"Subir\", \"Hait\",\nemail = \"haitsubi@msu.edu\",\nrole  = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0004-9871-9677\"))",
  "Description": "An extended epidemiological modelling framework that goes\nbeyond the classical SIR (Susceptible-Infectious-Recovered)\nmodel. Supports SEIR\n(Susceptible-Exposed-Infectious-Recovered), SEIRD\n(Susceptible-Exposed-Infectious-Recovered-Deceased), SVEIRD\n(Susceptible-Vaccinated-Exposed-Infectious-Recovered-Deceased),\nand age-stratified compartmental models with flexible\nintervention functions (spline-based, Gaussian process, or\nuser-defined). Inference is available via maximum likelihood or\nsequential Monte Carlo (SMC, also known as particle filtering)\nwith no external binary dependencies. Includes a\ndependency-free real-time effective reproduction number (Rt)\nestimator, spatial multi-patch models with gravity-model\nmobility, ensemble forecasting via Bayesian model averaging\n(BMA), and proper scoring rules including CRPS (Continuous\nRanked Probability Score), coverage, and MAE (Mean Absolute\nError) for forecast evaluation. Methods follow Anderson and May\n(1991, ISBN:9780198545996), Doucet, de Freitas, and Gordon\n(2001) <doi:10.1007/978-1-4757-3437-9>, Cori et al. (2013)\n<doi:10.1093/aje/kwt133>, and Gneiting and Raftery (2007)\n<doi:10.1198/016214506000001437>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/causalfragility-lab/EpiNova",
  "BugReports": "https://github.com/causalfragility-lab/EpiNova/issues",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://causalfragility-lab.r-universe.dev",
  "Date/Publication": "2026-04-21 22:47:01 UTC",
  "RemoteUrl": "https://github.com/causalfragility-lab/epinova",
  "RemoteRef": "HEAD",
  "RemoteSha": "eca7c999dbecddebb85f34cb0475af16f88940ba",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-24 06:58:57 UTC",
    "User": "root"
  },
  "Author": "Subir Hait [aut, cre] (ORCID: <https://orcid.org/0009-0004-9871-9677>)",
  "Maintainer": "Subir Hait <haitsubi@msu.edu>",
  "MD5sum": "3510200014eade506655e47fa43e2707",
  "_user": "causalfragility-lab",
  "_type": "src",
  "_file": "EpiNova_0.1.0.tar.gz",
  "_fileid": "6947888b78de5a5a36a42125d4b6796ff17e7b4b68f35c70850d32d312087507",
  "_filesize": 82387,
  "_sha256": "6947888b78de5a5a36a42125d4b6796ff17e7b4b68f35c70850d32d312087507",
  "_created": "2026-05-24T06:58:57.000Z",
  "_published": "2026-05-24T07:10:02.665Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77578860831,
      "time": 170,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7183078299"
    },
    {
      "job": 77578860829,
      "time": 170,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7183078383"
    },
    {
      "job": 77578860833,
      "time": 81,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7183131007"
    },
    {
      "job": 77578860823,
      "time": 82,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7183129946"
    },
    {
      "job": 77578679977,
      "time": 223,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7183059329"
    },
    {
      "job": 77578860822,
      "time": 171,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7183078139"
    },
    {
      "job": 77578860826,
      "time": 109,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7183071282"
    },
    {
      "job": 77578860835,
      "time": 109,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7183071215"
    },
    {
      "job": 77578860834,
      "time": 116,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7183072132"
    }
  ],
  "_buildurl": "https://github.com/r-universe/causalfragility-lab/actions/runs/26354513706",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/causalfragility-lab/epinova",
  "_commit": {
    "id": "eca7c999dbecddebb85f34cb0475af16f88940ba",
    "author": "Subir Hait <264290991+causalfragility-lab@users.noreply.github.com>",
    "committer": "Subir Hait <264290991+causalfragility-lab@users.noreply.github.com>",
    "message": "docs: update cran-comments for resubmission\n",
    "time": 1776811621
  },
  "_maintainer": {
    "name": "Subir Hait",
    "email": "haitsubi@msu.edu",
    "login": "causalfragility-lab",
    "description": "",
    "uuid": 264290991
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "deSolve",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "splines",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "DEoptim",
      "role": "Suggests"
    },
    {
      "package": "MASS",
      "role": "Suggests"
    },
    {
      "package": "numDeriv",
      "role": "Suggests"
    },
    {
      "package": "rstan",
      "role": "Suggests"
    },
    {
      "package": "TMB",
      "role": "Suggests"
    },
    {
      "package": "EpiEstim",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "ggpubr",
      "role": "Suggests"
    },
    {
      "package": "patchwork",
      "role": "Suggests"
    }
  ],
  "_owner": "causalfragility-lab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-17",
      "n": 7
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "causalfragility-lab",
      "count": 7,
      "uuid": 264290991
    }
  ],
  "_userbio": {
    "uuid": 264290991,
    "type": "user",
    "name": "causalfragility-lab"
  },
  "_downloads": {
    "count": 544,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/EpiNova"
  },
  "_devurl": "https://github.com/causalfragility-lab/epinova",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/EpiNova.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/causalfragility-lab/epinova",
  "_realowner": "causalfragility-lab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-04-22"
    }
  ],
  "_exports": [
    "%||%",
    "build_multipatch_SEIR",
    "build_phi_pulse",
    "build_pi_exp",
    "build_pi_spline",
    "build_pi_step",
    "compose_pi",
    "ensemble_forecast",
    "estimate_Rt",
    "estimate_Rt_simple",
    "fit_mle",
    "fit_smc",
    "gp_cov_sqexp",
    "gravity_mobility",
    "hubei_covid",
    "plot_forecast",
    "plot_multipatch_snapshot",
    "plot_Rt",
    "plot_scenarios",
    "plot_trajectory",
    "prep_proportions",
    "project_scenarios",
    "score_forecast",
    "solve_model",
    "solve_multipatch"
  ],
  "_help": [],
  "_readme": "https://github.com/causalfragility-lab/epinova/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "deSolve",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "epinova",
  "_universes": [
    "causalfragility-lab"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-24T07:01:42.000Z",
      "distro": "noble",
      "commit": "eca7c999dbecddebb85f34cb0475af16f88940ba",
      "fileid": "a5a469b5a7d55070327849747633ea93eb37fae90a07779d3fa065574003afc0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/causalfragility-lab/actions/runs/26354513706"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-24T07:01:41.000Z",
      "distro": "noble",
      "commit": "eca7c999dbecddebb85f34cb0475af16f88940ba",
      "fileid": "1c0ae30e48c8b23574a0d9d468dd17849b30f57fe670dbb1032dbee57896b09a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/causalfragility-lab/actions/runs/26354513706"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-24T07:09:36.000Z",
      "commit": "eca7c999dbecddebb85f34cb0475af16f88940ba",
      "fileid": "0445a29cf6cd89c0bf9b3bfef7684662c28bc43103f55004e7aaa58241788d72",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/causalfragility-lab/actions/runs/26354513706"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-24T07:09:26.000Z",
      "commit": "eca7c999dbecddebb85f34cb0475af16f88940ba",
      "fileid": "7526c57cfc2076531a20a4e1a93c0e135e120667025c144dc0206390fb6ede45",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/causalfragility-lab/actions/runs/26354513706"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-05-24T07:01:59.000Z",
      "commit": "eca7c999dbecddebb85f34cb0475af16f88940ba",
      "fileid": "25d34762c9a50658d863a1eef38ecd27f772dc26670989545e7be209887f01f2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/causalfragility-lab/actions/runs/26354513706"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-24T07:00:36.000Z",
      "commit": "eca7c999dbecddebb85f34cb0475af16f88940ba",
      "fileid": "fef5fada45db6a06b9608401bcee68cc33ae87001c035f51b726389adc072848",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/causalfragility-lab/actions/runs/26354513706"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-24T07:00:24.000Z",
      "commit": "eca7c999dbecddebb85f34cb0475af16f88940ba",
      "fileid": "b080a06308eb657a72f4c38395aec0d64e1f5aa2b3d55d66a69100607c891ab1",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/causalfragility-lab/actions/runs/26354513706"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-24T07:00:38.000Z",
      "commit": "eca7c999dbecddebb85f34cb0475af16f88940ba",
      "fileid": "85f48b3ce27c3924fbf8575af137caef5d7dcbeb93eaead61fa2cdfe2d17d7fc",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/causalfragility-lab/actions/runs/26354513706"
    }
  ]
}